An ethical problem

Money or principle?

Something bothering me...

Let's say that an organization gets a lot of funding from the government. This organization prides itself on putting people first. Including, it can be assumed, its employees. But this organization gets directed by the government to mandate a controversial medical procedure to its employees. Or else lose its funding.

So is the organization looking after the best interest of the employees by mandating the procedure perhaps against their wishes, or isn't it?

Or is getting government money more important than personal liberty?